Best HR Software for Nonprofits in 2025

GoCo is a modern HRIS for nonprofits that combines onboarding, payroll, volunteer tracking, benefits administration, and compliance management into one unified system. Designed for small to mid-sized teams, GoCo simplifies complex HR processes through automation—freeing up valuable time for people-focused work.

The platform includes essential HR tools like employee onboarding, time tracking, performance reviews, benefits administration, payroll, and time-off management. It integrates easily with existing tools, allowing nonprofits to consolidate and optimize their HR tech stack without starting from scratch.

GoCo stands out for its intuitive interface, mobile accessibility, and employee self-service features that make it easy for both HR admins and team members to navigate. Nonprofit users consistently highlight GoCo’s affordability, ease of use, and responsive support as key advantages. Overall, GoCo delivers a powerful, scalable solution for nonprofits that want modern HR functionality without enterprise-level

Namely is an HR software platform well-suited for mid-sized nonprofits seeking a solution to manage HR, payroll, benefits, and performance tracking. Designed to streamline people operations, Namely helps nonprofit HR teams centralize workflows, improve compliance, and reduce administrative overhead.

The platform allows staff to manage time-off requests, access pay stubs, and update personal info without HR intervention, freeing up time for strategic initiatives. Its integrated approach that combines onboarding, benefits administration, performance reviews, and time tracking, also helps eliminate tool sprawl – a common challenge in nonprofit environments.

However, user reviews also indicate notable drawbacks for nonprofits to consider. Support responsiveness is a frequent complaint, with users reporting delays and limited resolution on urgent issues. Payroll functionality, while sufficient for standard use cases, lacks flexibility in areas like earnings customization and processing deadlines, which can be problematic for grant-funded or project-based compensation models. Integration issues between modules (especially HRIS and payroll) sometimes require manual workarounds, which may add friction for lean HR teams.

Overall, Namely can offer a centralized platform to modernize the HR process, but organizations should weigh the platform’s user-friendly design and core functionality against potential support and integration challenges before committing.

Calamari is a cloud-based HR software tailored for small to medium-sized nonprofits seeking efficient management of employee attendance and leave. The platform offers two primary modules: leave management and time tracking. The leave management module automates PTO calculations and provides an absence calendar that integrates with tools like Google Workspace, Slack, and Asana, facilitating seamless scheduling and communication.

Users praise Calamari for its user-friendly interface and ease of implementation. The platform's intuitive design simplifies the onboarding process, allowing teams to adopt the system quickly without extensive training.

However, some users have noted areas for improvement. Feedback indicates a desire for more robust reporting options, particularly customizable reports that can cater to specific organizational needs. Additionally, while the platform integrates with various tools, some users have expressed a need for enhanced HR documentation features to better support comprehensive employee records management.

TalentHR is an HR software platform designed to streamline people management for small to mid-sized organizations. The platform offers essential HR functionalities such as employee management, time-off tracking, applicant tracking, onboarding, people analytics, file management, performance reviews, asset management, and incident reporting. Its intuitive design and user-friendly interface enable nonprofit organizations to efficiently manage HR processes without requiring extensive technical expertise.

Nonprofit users often praise TalentHR for its ease of use and quick implementation. The platform's clean layout and straightforward navigation simplify HR tasks, allowing organizations to focus more on their mission-driven activities. Features like the org chart and PTO manager are highlighted as particularly valuable, providing clear visibility into team structures and time-off management.

However, some users have identified areas for improvement. There is a desire for enhanced customization options to better tailor the platform to specific organizational needs. Additionally, while TalentHR offers asset management in its paid plans, some users have expressed interest in having equipment tracking capabilities included in the free version.

While TalentHR does offer a free version of its product, it is not nearly as robust as similar paid platforms. Its lack of a mobile app and email-only support also limits user-friendliness.

Zoho People is a cost-effective HR software solution well-suited for nonprofits that need to manage core HR functions without overextending limited budgets. It offers essential features like employee record management, time and attendance tracking, leave management, performance reviews, and basic benefits administration.

Users appreciate its affordability, intuitive interface, and native integration with the broader Zoho ecosystem, which includes tools for finance, CRM, and project management. These integrations can help nonprofit teams coordinate across departments without needing multiple standalone platforms.

However, reviews note some limitations. Scalability can be a concern for rapidly growing organizations, and the platform’s reporting and customization capabilities may fall short for nonprofits with complex compliance needs or grant tracking requirements. Advanced analytics and workflow automation are present but not as robust as those offered by enterprise-level systems.

Remote is a global HR and payroll platform built for companies managing international employees and contractors. It supports compliant hiring in dozens of countries and simplifies global payroll, tax documentation, localized contracts, and benefits administration.

Customer reviews on G2 consistently praise Remote’s intuitive interface, reliable performance, and strong employee experience. Users appreciate how easy it is for international team members to onboard, access pay information, and stay compliant. Support responsiveness is also commonly noted as a strong point.

That said, Remote may not be the best fit for organizations looking for a fully centralized, all-in-one HR software platform. It lacks some of the broader HRIS functionality – such as performance management, onboarding workflows, or custom reporting – found in dedicated core HR systems.

However, Remote can integrate with more well-rounded platforms like GoCo, allowing organizations to combine Remote’s international payroll strengths with GoCo’s all-in-one HR management tools.

WebHR is a cloud-based human resource management system (HRMS) designed to streamline HR processes for organizations of various sizes, including nonprofits. The platform offers a comprehensive suite of features including recruitment, onboarding, payroll, time and attendance tracking, leave management, performance appraisal, and benefits administration.

Nonprofit users often appreciate WebHR's affordability and the functionalities that allow for the automation of routine HR tasks. The system's customization options and integration capabilities with various third-party applications further enhance its adaptability to specific organizational needs. ​

However, some users have noted areas for improvement, such as the need for updates to certain features like announcement templates for birthdays and anniversaries. Additionally, while the platform is generally praised for its ease of use, there have been mentions of a learning curve associated with navigating its extensive feature set.

Paylocity is an HR and payroll platform designed to meet the needs of nonprofits by automating core functions such as payroll processing, benefits administration, time tracking, and compliance management. Its user-friendly interface and self-service portal enable nonprofit organizations to streamline HR tasks, allowing staff to focus more on their mission-driven activities.

Users often commend Paylocity for its intuitive design and ease of use, noting that the platform simplifies complex HR processes and provides valuable insights through its reporting capabilities. The integration of various HR functions into a single system is also appreciated, as it reduces the need for multiple disparate tools. ​

However, some users have reported challenges with customer service responsiveness, indicating that resolving issues can sometimes be time-consuming. Additionally, while the platform offers a broad range of features, some organizations have experienced difficulties during the initial implementation phase, particularly in configuring the system to meet their specific needs.

LeaveBoard is a cloud-based HR and leave management system tailored for small to medium-sized nonprofits seeking to streamline employee time-off tracking and centralize workforce data. The platform offers features such as automated leave tracking, employee self-service portals, real-time absence calendars, and integration with communication tools like Slack, enhancing organizational efficiency.

Users often commend LeaveBoard for its cost-effectiveness, noting that it simplifies leave management processes and reduces the reliance on manual spreadsheets. The system's automation capabilities and centralized data storage are particularly beneficial for organizations aiming to optimize HR operations without significant investment. ​

However, some users have identified areas for improvement, such as the desire for a more intuitive user interface and enhanced customization options to better align with specific organizational needs. Additionally, while the platform integrates with various tools, some users have expressed a need for more comprehensive reporting features to support detailed HR analytics.

For organizations looking for a cost-effective time tracking and leave management platform, LeaveBoard is a good option, however as a point solution it doesn’t have the same capabilities of an all-in-one HR software platform, such as onboarding, benefits administration, and payroll.

PurelyHR is a modular HR software solution designed to streamline HR processes for small to medium-sized organizations, including nonprofits. Its suite of modules includes Time-Off for leave management, Time-Clock and Time-Sheet for attendance and time tracking, Performance for performance reviews, and Staff for employee information management. This modular approach allows organizations to select and pay only for the features they need, making it a flexible and cost-effective solution.

Users often appreciate PurelyHR's user-friendly interface and the automation it brings to time-off tracking and employee data management, reducing the reliance on spreadsheets and manual calculations. The platform's customization options enable organizations to tailor it to their specific policies and procedures, enhancing its adaptability. ​

However, some users have noted areas for improvement, such as the need for enhanced reporting capabilities and more intuitive navigation in certain modules. Additionally, while the initial setup is generally straightforward, configuring complex accrual rules and permissions can be time-consuming.

ClickUp is a versatile project management platform that offers a comprehensive suite of tools tailored to meet the diverse needs of nonprofit organizations. Its features include task management, time tracking, goal setting, and collaboration tools, all designed to enhance organizational efficiency.

Nonprofit users often commend ClickUp for its user-friendly interface and the ability to assign tasks to team members and volunteers effectively. The platform's dashboard provides a macro-level view of project progress, enabling organizations to identify areas that may require additional support.

However, some users have noted areas for improvement. The platform's extensive feature set can result in a complex user interface, leading to a learning curve for new users. Additionally, while ClickUp offers time tracking features, some users have found them to be less intuitive compared to other functionalities. ​

While ClickUp is a good cost-effective solution for project management and messaging, it lacks additional features that all-in-one HR software solutions offer, such as payroll, benefits administration, performance management, and onboarding.